About pydra-fsl

Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

clinica-pydra-fsl provides Pydra tasks for running and composing FSL commands.

Contents:

• API
  • BET
    • Brain Extraction Tool (BET)
    • RobustFOV
  • Eddy
    • Eddy
    • Topup
    • ApplyTopup
  • FAST
  • FLIRT
    • FLIRT
    • ConvertXFM
    • Img2ImgCoord
    • Img2StdCoord
    • Std2ImgCoord
  • FNIRT
    • FNIRT
    • FNIRTFileUtils
    • ApplyWarp
    • ConvertWarp
    • InvWarp
  • fslmaths
  • FUGUE
    • FUGUE
    • PrepareFieldmap
    • Prelude
    • SigLoss
  • SUSAN
  • Utils
    • ChFileType
    • FFT (Fast Fourier Transform)
    • Info
    • Interleave
    • Merge
    • Orient
    • Reorient2Std
    • ROI (Region-Of-Interest)
    • SelectVols
    • SmoothFill
    • Split
    • SwapDim

Indices and tables

• Index

• Module Index

• Search Page